#!/bin/bash
# /* vim: set filetype=sh : */ # -*- sh -*-

#Initialize SELECTed features to nil
#This is done by not creating the array until it is time to use it
declare -i i=0
declare -i classes=2
declare -i j=0
declare -i runs=31

#DataStems=${DataStems="agaricus-lepiota anneal audiology.standardized auto-mpg balance-scale breast-cancer breast-cancer-wisconsin bridges-v1 bridges-v2 bupa crx echocardiogram ecoli flag glass hayes-roth hepatitis house-votes-84 imports-85 ionosphere iris letter-recognition wdbc wine yeast zoo"}
#DataStems=${DataStems="agaricus-lepiota "}
#DataStems=${DataStems="anneal "}
#DataStems=${DataStems="audiology-standardized "}
#DataStems=${DataStems="auto-mpg "}
#DataStems=${DataStems="balance-scale "}
#DataStems=${DataStems="breast-cancer "}
#DataStems=${DataStems="breast-cancer-wisconsin "}
#DataStems=${DataStems="bridges-v1 "}
#DataStems=${DataStems="bridges-v2 "}
#DataStems=${DataStems="bupa "}
#DataStems=${DataStems="crx "}
#DataStems=${DataStems="ecoli "}
#DataStems=${DataStems="flag "}
#DataStems=${DataStems="glass "}
#DataStems=${DataStems="hayes-roth "}
#DataStems=${DataStems="hepatitis "}
#DataStems=${DataStems="house-votes-84 "}
#DataStems=${DataStems="imports-85 "}
#DataStems=${DataStems="ionosphere "}
#DataStems=${DataStems="iris "}
#DataStems=${DataStems="letter-recognition "}
#DataStems=${DataStems="wdbc "}
#DataStems=${DataStems="wine "}
#DataStems=${DataStems="yeast "}
#DataStems=${DataStems="zoo "}
DataStems=${DataStems="echocardiogram "}
for stem in $DataStems
do
  allTreatments=""
  treatments=""
  Selected=""
  ./arfftoSelectTar $stem.arff
  #obtain # of classes and store to classes
  classes=`./grabClasses $stem.names` 
  echo "Running Select on $stem"
  while [ $j -lt $runs ]; do
    while [ $i -lt $classes ]; do

      #run Tar3 on current class, pipe to an output file
      tar3 $stem > tar3.out
      
      #To store the individual TAR3 treatments,
      #uncomment the following line:
      #cat tar3.out > $stem.$j.$i.out

      #parse output file to receive attributes used
      #store received attributes to selected features list
      oldtreatments=$treatments
      treatments=`./getNBestTreatments tar3.out`
      if [ -n "$oldtreatments" ] ; then
        treatments=$treatments","$oldtreatments
      fi
 
      #Rotate the Best Class  
      cp $stem.names $stem.old.names
      ./rotateClasses $stem.old.names > $stem.names

      #increment counter
      let i=$i+1  
    done;  

    rm $stem.old.names
    rm tar3.out
    
    #Examine results of treatments and pick out the unique attributes
    export treatments
    treatments=`./trimTreatments `
    #echo $treatments
    #To see the results of trimming the treatments
    #down to their unique parts, uncomment the following line:
    #echo "The trimmed treatments were: $treatments"

    allTreatments=$treatments","$allTreatments
    
    let i=0
    treatments=""
    oldtreatments=""

    let j=$j+1
  done;
  export allTreatments
  export runs
  #Count attributes selected and determine which ones occur
  #in a two-thirds majority of the treatments 
  Selected=`./SelectTreatment`
  echo "We selected attributes: $Selected from dataset $stem"
  export Selected
  ./trimArff $stem".arff"
  j=0
done;


#Do Column Removal based on attributes in SELECTed features list
#Run Crossval on original and pruned datasets,