#Script designed to test 


#Determine which datasource to use
It=a2b/breast-cancer
It2=breast-cancer
#It=a2b/audiology 
#It2=audiology

#establish path to tmp directory
Tmp="../../../../../var/tmp" #path to tmp directory from current directory
Tmp2="../../../../var/tmp"   #path to tmp directory from parent directory

#Create folders in tmp directory for data storage and processing
mkdir -p $Tmp
mkdir -p $Tmp/data/
mkdir -p $Tmp/data/filtered-data
mkdir -p $Tmp/data/test-data
mkdir -p $Tmp/data/test-results
mkdir -p $Tmp/data/final-stats
mkdir -p $Tmp/data/tex-output

#Change directory to parent directory
cd ../

#Clear all folders in tmp directory of all data that might have been previously
#created and used (in the event that the tmp directorys already existed)
make clean-all

#Copy datasource to tmp directory
cp  ../../../trunk/uci/discrete/$It.arff $Tmp2/.              

#Filter comments and excess whitespace from datasource and store new file in
#filtered-data folder of tmp/data/ directory
make pdThreshold=0.0 filter-data

#This line used previouly, would create training and testing files for sawtooth
#Removed based on need for time-locked data processing
make resample-data

#Line used to create a copy of the filtered data for testing
cp $Tmp2/data/filtered-data/$It2.arff $Tmp2/data/test-data/$It2--test.arff

#This line used previously, would use the make file to process training and 
#testing files for sawtooth.
#make zThresh=-4.2645 perform-test

set -x


#Run SAWTOOTH on filtered data
echo -e "SAWTOOTH \"$<\" \"$Tmp2/data/test-data/$It2--test.arff\" \"$@\""
gawk -f ./code/sawtooth.awk ERA=50 Verbose=0 Brief=0 SUBBINS=5 \
	 Pass=1 $Tmp2/data/test-data/$It2--test.arff \
         zThresh=-4.2645  Pass=2 $Tmp2/data/test-data/$It2--test.arff 

#Create summary of data obtained from running SAWTOOTH
#make class-stats

#Create .tex output of the data obtained from the test
#make texOutput=stats-table.tex \
#     texStatsLabel="\"Unfiltered Data,  z-test alpha = 0.01.\"" \
#     texStatsId="\"tab:FinalStats:Unf:0.01\"" tex-output


#cat ../../../../var/tmp/data/final-stats/${It2}.csv

#cat ../../../../var/tmp/data/tex-output/stats-table-0.8-0.01.tex

#diff $Tmp2/$It2.arff $Tmp2/data/filtered-data/$It2.arff