#!/bin/bash
Here=`pwd`
Sandbox=`$Here/bin/playpen coseekmo`
Repeats=20
Use=10
Pred=30
Trust=95
SpecialMethods="cocomost cocomin1 cocomin2"
NormalMethods="lc m5p lsr nearestNeighborMe nearestNeighborMre staticLocomo dynamicLocomoMean dynamicLocomoMedian"
ColumnPrunerMethods="oldCocominWrapper newCocominWrapperNative newCocominWrapperMedian lsrWrapper lsrWrapperNoLog m5pWrapper m5pWrapperNoLog"

Log=$Here/results/mainLog

trap "/bin/rm -rf $Sandbox" 0 1 2 3 15

cp bin/* $Sandbox
cp cocomin/* $Sandbox
cp cocomost/* $Sandbox
cp config/* $Sandbox
mkdir $Sandbox/data
cp data/* $Sandbox/data/
cp evaluation/* $Sandbox
cp lc/* $Sandbox
cp localwrapper/* $Sandbox
cp locomo/* $Sandbox
cp methods/* $Sandbox
cp nearest/* $Sandbox
cp weka/* $Sandbox

cd $Sandbox

g++ -Wall cocomostFSS.cpp -o cocomostFSS
g++ -Wall fastCocomin.cpp -o fastCocomin
g++ -Wall cocomin81.cpp -o cocomin81

gawk -f coc81.awk data/coc81modetypelangtype.csv
gawk -f nasa93.awk data/nasa93.csv

#Find dataset sizes
#./datasetSizes > $Here/results/datasetSizes

#Run the experiment and generate the results
#./generate $Here $Sandbox $Repeats $Use $Pred "$SpecialMethods" "$NormalMethods" "$ColumnPrunerMethods" $Log

#Run the non-parametric analysis using the mwu test (Possible evaluation criteria are AR, MRE, MER, BRE, IBRE)
#./mwu $Here $Log AR
#./mwu $Here $Log MER
#./mwu $Here $Log MRE

#Run the non-parametric analysis using the median test (Possible evaluation criteria are AR, MRE, MER, BRE, IBRE)
#./medianTest $Here $Log AR

#Run the parametric analysis
#./parametricAnalysis $Here $Sandbox $Pred $Trust $Log

#Generate the MREs to see whether the results are Normal
#./mre $Here $Log

#Generate the REs to see whether the results are Normal
#./re $Here $Log